Siddhartha Joshi

Thank you, Rajat. Those files only have channel maps but not the mapping from sorted cluster to channel (or channel position). However, we did find that this information is saved...

Hi Michael, We stumbled on this "solution" while trying to figure out where Kilosort puts the cluster-to-channel mapping. There might still be a way to get it after running Kilosort...

Thanks for all the useful information in this discussion, Laurenz and Michael. Michael - I wonder if the mismatch might be due to the electrode map file that you provide...