Shu Zhang

icon company Peking University; Stanford University icon location PhD @pku-tanglab from Peking University. Postdoc @ Mischel Lab and Chang Lab from Stanford University.

Results 3 comments of Shu Zhang

Sample Bam File

I run velocyto in the command line but not in the notebooks. Please make sure that bam files containing CB and UB tag: ![image](https://user-images.githubusercontent.com/22163018/45992206-15aee180-c0bb-11e8-9f4e-25f28db55469.png) If the bam files didn't containing...

Bam file does not contain cell and umi barcodes appropriatelly formatted (Run on modified Smart-seq2 protocol)

Thank you! I tried "simplesam", it works well. But it occupied too much memory of cpu.

IndexError: list index out of range

I had a similar error. File "/storage/xx/software/miniconda3/lib/python3.9/site-packages/idr-2.0.2-py3.9-linux-x86_64.egg/idr/idr.py", line 45, in load_bed peak = Peak(data[0], data[5], IndexError: list index out of range File "/storage/xx/software/miniconda3/lib/python3.9/site-packages/idr-2.0.2-py3.9-linux-x86_64.egg/idr/idr.py", line 45, in load_bed peak = Peak(data[0],...