ShenAoAO

How to extract whole-protein structural representations with multi-chain input?

4

Dear authors, Thank you for your excellent work on SaProt! I have a question regarding how to extract the structural representation of a *multi-chain* protein using your model. Specifically, if...

How are `sequence`, `structure`, and `text` files matched in FAISS index?

2

Hi, thanks for releasing this great work! I’m currently exploring the FAISS index at: ``` faiss_index/SwissProt/ProTrek_650M_UniRef50/ ``` Inside this directory, I noticed that: * `sequence/ids.tsv` contains UniProt IDs, and each...