cellcall

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ViewInterCircos

6

Dear, I would like to ask one question,when I perform the circos plot, I got error like that  Thanks in advance for helping me out.

sailseem

A problem with TransCommuProfile() function while implementing vignettes codes

2

Hi! I'm new to CellCall and I like this tool after reading the paper. But when I try implementing the codes in the readme file, I encounter some problems. ```...

chunxubioinfor

Hi, I'm having a problem with ViewInterCircos

4

Hi, When I was drawing with ViewInterCircos, I got the following Error: "Error in if (trim > 0 &&n) {: missing value where TRUE/FALSE needed ", I tried several solutions...

athanasy-ljw

A problem of figure output

1

Hi! I have a problem with figure output using viewPheatmap. How can I get the figure of viewPheatmap? I try the following function but it didn't work. png( ) viewPheatmap(...

HMU-ChaoWang

problems with TransCommuProfile()

3

When using the function TransCommuProfile(),I got an error: ` Error in ConnectProfile(object, pValueCor = pValueCor, CorValue = CorValue, : object 'triple_relation' not found ` Does anyone know how to fix...

qingzengLi

Mouse cell-cell interaction shows Human KEGG pathway in the results?

1

Thanks for the great tool and visualization options! I would like to know whether the cell - cell interaction for mouse is run on human interactions and pathway database or...

jyopadi

show ligand/receptor names in ViewInterCircos result

1

Hi, Shelly, thanks for your package,it helps a lot. I wonder if it possible to show the ligand and receptor names in the circle plot results in the package? Looking...

dnchenchen

cellcall with integrated data (Seurat)

1

Hello, Could you give us some indications on how to create the right input data for cellcall in case of integrated data (Seurat)? We plan to extract expression data from...

akramdi

Image alignment in getGSEAplot

1

Hi, I was using getGSEAplot with my data and encountered a warning: "Graphs cannot be vertically aligned unless the axis parameter is set. Placing graphs unaligned." and the output was...

QuinceyLv

Update data2ConnectProfile.R

1

fixed a typo

sbwilson91