Sh1von

How to get a tree containing all my MAGs

1

Hello, I noticed that "GTDB-TK now uses a divide-and-conquer approach where the bacterial reference tree is split into multiple order-level subtrees." I would like to obtain a tree that includes...

>>> demo = AutoPVS1('13-113149093-G-A', 'GRCh38') >>> print(demo.hgvs_c, demo.hgvs_p, demo.consequence, demo.pvs1.criterion, demo.pvs1.strength_raw, demo.pvs1.strength) NM_000504.4:c.1043G>A NP_000495.1:p.Trp348Ter nonsense NF5 Strength.Strong Strength.Moderate http://autopvs1.genetics.bgi.com/variant/hg38/13-31247103-C-T My version of VEP is 108.2. Do I have to change...

u said that "PAF1KG" is population variant in 1000 Genome, so why i get the value "-1"? And i hvae get some break ends (BND) result, PAFG and PAF1KG =...