Sebastian Franz

There are currently two nuclei integration tests. 1. One tests against bodgeit demo target, but is currently disabled (commented out). Unfortunately I could not find a reason why it was...

🔧 Maintenance: Move hook integration tests to hook directories

1

When moving to Makefile builds in the CI, all of the scanner integration-tests were also moved to the specific scanner directories. [Example ssh-scan tests](https://github.com/secureCodeBox/secureCodeBox/commit/dc45669e58c8db67f3005484d558d65b35edc8ab)) However, the hook integration tests are...

Currently, we use the amass docker container published on dockerhub. Now we added securityContext values to every scanner. During this process, I encountered that it is necessary to set the...

[Consistency/Scanners] SCB scanners use different versioning system

1

Working on the consistency of all scanner files, it was noticed that our own scanners (SCB scanners), that is *test-scan*, *git-repo-scanner* and *zap-advanced*, use a different versioning scheme which is...

Scanners use runAsNonRoot: false in their values.yaml securityContext

1

Once PR #714 is applied, all values.yaml files have a securityContext set. During testing this, it was noted that some scanners have to use *runAsNonRoot: false* and/or *readOnlyRootFilesystem: false* in...

## 🚓 New Scanner implementation request ### Is your feature request related to a problem As a secureCodeBox user I would like to use [PingCastle](https://www.pingcastle.com/) as a security scanner to...

AWS endpoints in data differ from AWS documentation

1

Hello, some endpoint addresses of AWS services in [rules.json](https://github.com/lupomontero/psl/blob/e8877e40e88e4472827dfa6e421fff2f3467f967/data/rules.json#L7397) differ from the official addresses in the [AWS documentation]( https://docs.aws.amazon.com/general/latest/gr/s3.html). For example: ```bash # Rules.json "s3-us-west-1.amazonaws.com" # AWS Docs "s3.us-west-1.amazonaws.com" ```...

Predictions for a secondary structure model ([dataset](https://github.com/J-SNACKKB/FLIP/tree/main/splits/secondary_structure)) should about match those from the [prottrans paper](https://ieeexplore.ieee.org/document/9477085). This could also be used to create a new test for the inferencer module with...

:woman_scientist: Add LoRA layers to fine-tune protein language models for embeddings calculation

4

After migrating from [bio_embeddings](https://github.com/sacdallago/bio_embeddings) to calculate embeddings directly in biotrainer for the provided sequences, it is now theoretically possible to allow for fine-tuning existing protein language models (pLMs) such as...

For the protein-protein interaction mode, singular values can't be concatenated by `torch.concat`. A reshaping like `embedding1.reshape(1)` would be necessary.