Sebastien-Raguideau

Hello, So I did a grep on the .gfa to extract sequence and links, that's this file. If you are interested I have other examples. Also, what I said previously...

Hi, They do share a 141 long kmer but one of them need to be reverse complemented. I didn't realise it when first submitted. It's because I'm using the .gfa...

Hi Thanks, for the thorough answer. I'll will stick to bam which, it seems, I'm already doing :)

Hi Gene, Thanks a lot for all of this. Yes, from my pipeline there is no possibility for 2 root to be identical. So it is likely not related to...

I just realised that I need to change my ufcg env to upgrade augustus. I didn't test it yet and will tel you if error persist after update. Regarding v1.0.1...

So I upgraded augustus to 3.5.0, the issue persists. To answer you question, yes there are successful augustus run before the failure. No problem occurs when using v1.0.1. I joined...

Sorry, I was not clear I do use batch execution and the issue interrupts it. So instead I've had to go through external parallel execution of ufcg. When doing external...