Sebastian Alexander Fuchs comments

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                                            Sebastian Alexander Fuchs

No variant calling close to the edge of reads?

Thanks for the quick reply. I would like to, but the file seems to be too big (1gb) to upload it here. Can I send it to you another way?...

No variant calling close to the edge of reads?

Thanks. That works and the output is now small enough. [VRE_BC_18-new_FLAGs_EFAU004_00264_1-81.txt](https://github.com/HKU-BAL/Clair3/files/9488575/VRE_BC_18-new_FLAGs_EFAU004_00264_1-81.txt) If this is not significant enough, I can provide a few more cases. Thanks again for looking into this.

No variant calling close to the edge of reads?

Thank you for your extensive analysis of the problem. This helps a lot! And also thanks for the suggestions how to bypass this. I will have to look into my...