Scott Norton
Scott Norton
Reopen of #67. While the developer's suggestion is appropriate for small datasets, it's highly cumbersome to perform manually for much larger upsets (33 sets with 16k distinct elements between them)....
Getting this error when running zUMIs 2.9.7c on a 1,000,000 read test dataset. ``` [1] "2022-08-30 11:08:40 EDT" [1] "Coordinate sorting intermediate bam file..." [bam_sort_core] merging from 0 files and...
System: Mac OS Catalina with Homebrew How to reproduce: ``` $ brew install openssl # as of 20 Apr 2020, installs [email protected] $ R > BiocManager::install("rtracklayer") ``` Expectation: the package...
I am trying to run a configuration where the input is a tuple of paths, some of which are optional. The pattern in this repository works for separate path inputs...
After running `nextflow lint` on a pipeline throwing zero errors, the green color from the success message persists in subsequent console lines. nextflow-25.04.2-dist, java openjdk-17.0.3, rocky linux 9, bash v5.1.8
Seqera AI requires a seqera.io account, however the core language server features can be used offline and without the assistance of AI. Additionally, some companies and countries have imposed restrictions...
### Description of the bug Running `nf-core pipelines lint` will touch modules.json, forcing the `repos.*.*.*.installed_by` array to be inlined, whereas commands that add or remove modules/subworkflows will force these same...
When the input cnr has only the header row, the script throws an error on pd.concat (Nothing to concat). This is caused by passing an empty list to pd.concat (`cnvlib/segmentation/__init__.py#L110`)....
This repository is [blacklisted by bioconda](https://github.com/bioconda/bioconda-recipes/blob/master/build-fail-blacklist#L601) because it fails to compile for macOS. The proximal cause is that the Makefile hardcodes `-fopenmp` which is not a valid flag for Apple-clang....