NIF-Ontology

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I think it will be a problem for us to conflate the transgenic line (organism) with the molecular expression as it is now. A neuron does not express a transgenic...

memartone

While others are under entity?

memartone

They are not in the sheet, but they should be added. This is a reminder for me to dig them out: Calbindin, parvalbumin and IP3 Receptor

memartone

Where are all the cerebellar cortex neurons in the CUTs

4

I only see two. Purkinje cell is missing and all the other well known cell types.

memartone

Why are there two Pvalb?

1

Both seem to be used but I think only one should be. One comes from NCBI gene.

memartone

Sequence feature vs gene

1

I know we discussed this, but it seems that the molecules are split between these two classes. If they are redundant, then we should only have one.

memartone

CRITICAL: Why are parvalbumin neurons coming up spiny?

1

When I search the Allen Data Base for Htr3a-Cre_NO152|Pvalb-T2A-Dre, all I get are aspiny neurons (as I would expect), but in the NPO, I get these: 'Mus musculus female right...

memartone

Where are the definitions for abbreviations

1

'Mus musculus neocortex Basket +Cav2_1_P_Q +GluA1 +GluA4 +Kv3 +Nav1_1 +Nav1_6 +:Nav1_7 +PGC1α +RGS4 +Ras111b +Rspn +α1GABAaR +α4GABAaR +δGABAaR +Adcy8 +AM +Cckbr +Cox6c +Cplx1 +Mef2c +Pparg +PV +Slit2 +Slit3 +Syt2 +SP...

memartone

Mus musculus neocortex +ilxtr:RGS6 +ilxtr:RGS7 +ilxtr:Zip1 +ilxtr:Znt3 +CR +Inhbb +CNP +SS +Pde2a +Adcy2 +Grin3a (intersectionOf GABAR ilxtr:LowerExpression) (intersectionOf GluR

memartone

Markram still not showing up under somatostatin neuron

3

Please fix before you go away.

memartone