NIF-Ontology
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SciCrunch
NIF Standard Ontologies (NIFSTD)
General NIF-Organism issue. 1) Many classes should be deprecated in favor of NCBITaxon ids, there is already a mapping to handle this. 2) Usage of http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl#hasTaxonRank is completely broken and...
It would be really nice to add the Desikan-Killiany-Tourville brain labeling protocol that is now used by default by the Mindboggle (http://mindboggle.info) and FreeSurfer software packages. Here is a list...
@memartone and @koweilin can I get a list of your demo terms so that I can run them against scigraph and our various services? This will be helpful as I...
NIF-Chemical has a number of BIRNLEX:*_2 style classes that were copied in from chebi and that need to be deprecated and moved to chebislim.
https://github.com/SciCrunch/NIF-Ontology/blob/master/ttl/resources.ttl finish pulling this in
For the purposes of search it may be desirable to model certain colloquial usages of terms such as, rat, mouse, and monkey, to point to defined classes, rather than adding...
There are a number of classes that only exist in neurolex that need to be backported into the ontology. A partial list is here. ```python [ 'NIFGA:nlx_110', 'NIFGA:nlx_143549', 'NIFGA:nlx_143553', 'NIFGA:nlx_143557',...
This Github issue is synchronized with Zendesk, **Ticket ID:** [478](https://scicrunch.zendesk.com/agent/#/tickets/478) **Priority:** N/A **Group:** Support **Assignee:** N/A **Original ticket description:** It causes more problems than it solves.
Is this a taxonomy? How should we model these. Need to do a review.
It is a bit weird to have cancer as a direct synonym... probably should be brain cancer? Or something similar. ``` BIRNLEX:12525 abbreviations: [] acronyms: [] categories: ['disease'] definitions: ['Abnormal...