Sathya Darmalinggam

icon indicating a website link https://www.ccrc-hauner.de/kim-hellmuth-lab

icon company Helmholtz Munich; LMU Munich icon location Munich icon location PhD student: Systems Biology of Rare Paediatric Diseases

Results 3 comments of Sathya Darmalinggam

Error in Aberrant Expression pipeline using external counts

Hi @nickhsmith , thanks for your quick reply. Here's the [snakemake log.txt](https://github.com/gagneurlab/drop/files/7838409/snakemake.log.txt) file with the error message. I then proceeded to do this to arrive at the error I posted...

Error in Aberrant Expression pipeline using external counts

Hi @vyepez88 , looks like the 2 files are not identical. ``` identical(GTEX_list,Sample_list) FALSE all.equal(GTEX_list,Sample_list) 'Lengths (56200, 60649) differ (string compare on first 56200)''56200 string mismatches' length(GTEX_list) 56200 length(Sample_list) 60649...

Error in Aberrant Expression pipeline using external counts

Hi @nickhsmith , unfortunately not. I tried various gene annotations but I always got the error at the same step. I am just currently working with processing some raw data...