Saroja Somasundaram issues

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                                            Saroja Somasundaram

ftp vs https in downloading 1000 genome vcf file in Step 2_Population_stratification

Hi, I noticed using the command wget ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20100804/ALL.2of4intersection.20100804.genotypes.vcf.gz from the 2_Main_script_MDS.txt downloads a corrupted file. Hence creating plink files from the vcf resulted in file read failure error. But when...

Saroja Somasundaram

ftp vs https in downloading 1000 genome vcf file in Step 2_Population_stratification

Addition of functions for checking whether clusters are outliers or donor-specific