Saranya-nanobiophotonics-lab

Help us on Bonito expected run time

3

Hi @iiSeymour We are using NVIDIA V100 GPU. We have created an virtual environment to run bonito. For test training run, we have used a fast 5 file of size...

How long would it take to convert downloaded dna_r9.4.1.hdf5 training dataset in Tesla V100?

1

Hi @iiSeymour We are using Tesla V100. We have used the "bonito download --training" to download bonito training dataset. It showed around 12Gb. Now, it is more than 17 hrs...

TypeError: Expected fp16 but received torch.float32

5

Hello, I tried using Bonito for basecalling. Following command was used "bonito basecaller [email protected] test/fast5 > test/data.bam" OUTPUT > reading fast5 > outputting unaligned bam > loading model [email protected] >...