Minimac3

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Hello, I am trying to use the minimal3 to create m3vcfs. Can you please let me know where I can download this file : geneticMapFile.b38.map.txt ? thanks! `mapMinimac: /map/geneticMapFile.b38.map.txt `

shiva-g

Error when 'make'

1

Get this with both cloning the repo and downloading the tar from ftp://share.sph.umich.edu/minimac3/Minimac3.v2.0.1.tar.gz. On Fedora 29. ``` ... g++ -std=c++0x -O4 -pipe -Wall -Werror -Wno-strict-overflow -I../include -I. -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS...

nienkevanunen

Removes -Werror from Makefile https://github.com/statgen/libStatGen/commit/4443d54d9a00f52fc6636370fbfea4288e902d63 Removes erroneous deletes in Chromosome constructor https://github.com/statgen/libStatGen/commit/3a10afe08c209dbacc3eca7794a5a8c0a42ee566

Alloyd21

Hi! I've been testing Minimac3 for a while and used it on two different servers with the exact same input data, reference panel, etc. The command was also the same....

danilovkiri

reference panel with missing genotypes

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Good day! Thank you for making Minimac available! I am trying to convert a reference panel to M3VCF format using Minimac3 --refHaps refpanel.vcf.gz --processReference --prefix ReferencePanel but I get an...

mfz

Hi there, I seem to have run into a problem with running make on the Minimac3 files. It gives an error as below: ``` make[1]: Entering directory `reduser/programs/Minimac3/src' make -C...

jerrywzy

Err std::bad_alloc when imputation

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Hello, thank you for the software minimac3. I have a problem now. When I am imputing the pig's chromosome 18 (the reference group is 30 pigs, the imputed group is...

scau-drr

Error with hg38 aligned vcf file

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When running processReference on a hg38 aligned reference, the following error occurs. Minimac3 does not seem to like chr1-chr22 and is expecting 1-22. What is the best way to handle...

jjfarrell