Alexander Metzger

I ran into an issue with `generate_blink_seq_randomly` while testing short audio inputs. For reference, `src.generate_batch.py` has the following implementation of `generate_blink_seq_randomly`: ```python def generate_blink_seq_randomly(num_frames): ratio = np.zeros((num_frames,1)) if num_frames

Database.each() does not bind correctly when installed with Bun

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### Issue Summary Everything binds correctly with Bun except the each() method. Calling the each() method causes the following error: ```console dyld[75263]: missing symbol called zsh: abort bun run index.ts...

Currently code execution with [`run_python_repl`](https://github.com/snap-stanford/Biomni/blob/429e5be970f149877515198aa138d204b308e32a/biomni/tool/support_tools.py#L13) works via `exec` meaning it has the same file/network/etc. permissions as the python process. There are good reasons to not containerize the entire process (such...