Sam Talbot

Feature request: sorted GFF listing paired with selection(s)

4

Currently I have a massive GFF file containing a lot of redundant and insignificant protein sequences to my project. It would be extremely efficient if I could view this GFF...

Estimated diminishing returns of RNA-seq reads and TSEBRA

1

Hi team, having good success with running test data sets so far, great work. I've got two questions that relate to the RNA-seq .bam files within braker1 pipeline (using GeneMark-ET)....

Text indexing is linked to multiple tracks

2

Hello, I have two text-index'd GFF files, but they are indexed by the same identifier. As a result, if I select one of these gff tracks, and go to the...

Hello, Thank you and your team for this fantastic tool. We have been very excited to implement it to accelerate a large number of our RNA-seq datasets for various reference...

Octoploid interpretation - more coverage needed?

1

Hello, Thank you for the tool. Your help was much appreciated for a previous hexaploid we had -- which confirmed the need for more sequencing data. Now we have an...

Hello EDTA team, I have a highly heterozygous diploid plant and have two haplotype assemblies, I've annotated them with EDTA independent of one another (--anno 1 --cds genes.cds --exclude genes.bed)....

Version control for genome assemblies

1

Hello! I'm not sure if this feature already exists, but we have a fair number of genomes. Nearly 20+, haplotype-resolved. As we get new sequencing data and I return to...