SaibotMagd

API allows you to change the rules of a category

2

### Detailed description of the problem I didn't know how to describe the issue better but I think this is at least for my application very serious. ### Expected Behavior...

small 3D-tif-file memmap convert to zarr failed

2

### Zarr version '2.16.0' ### Numcodecs version '0.11.0' ### Python Version '3.11.3' ### Operating System Ubuntu 22/ Debian 10 (tried it on 2 systems with 2 Fiji versions) ### Installation...

Edge Detection failed on atlas annotation file

29

I tried the edge detection on my own atlas files:  but the result is broken:  ... when I compare my annotation file to the annotation file in your...

Can't load larger Image file

6

I try to load my example dataset (280GB) into mag using the roi parameter. But it won't load. I also tried to load it using the GUI, it say "loading...

Loading an Atlas-Annotation is irritating

7

I try to load the 25um ABA atlas into mag: ``` bash = run + \ " --img " + '/home/tgottsch/anaconda3/ClearMap2/ClearMap/Resources/Atlas' + \ ' --reg_suffixes atlasVolume.nii annotation.nii' + \ "...

z-Dimension Error in "merge_atlas_segs" step

1

Next: step 6 in Protocol 5 on a 2D image gave me this error: ``` root - INFO - original shape: (0, 839, 1416), new shape: [ 0 839 1416]...