Sagi Polaczek

Added skip feature

3

#141 This is the implementation I came up with. See details of the feature in the attached issue

Add support for SKIPPING cells' execution

3

Hey, First, great open source project. I suggest the following feature: Currently to execute the entire notebook we can do: ~~~python def test_notebook(self): notebook_path = "fuse_examples/tutorials/hello_world/hello_world.ipynb" # Execute the whole...

Make ISIC multimodal, when the additional modality is: * Sex - patient's sex * Age - patient's age * Anatom site - the location of the lesion on the patient's...

🧲 Op MRI (Duke and Prostate-X)

6

The purpose of this PR is to finish Michal's (Tal's) work on the MRI Ops and the Duke & ProstateX examples. ### PR IS NOT READY #### Plan: - [x]...

Waiting for a mid-CR . Please note the the second version of the mnist ddp runner (v2) is only differ by the data module.

create documentation project on Read the Docs

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Hey! This issue aims to added documentation for **FuseMedML** using Read the Docs automating building. Currently we have [this](https://fuse-med-ml.readthedocs.io/en/latest/), which is clearly irrelevant. The end goal is to have Fuse's...

**Is your feature request related to a problem? Please describe.** As described [here](https://github.com/BiomedSciAI/fuse-med-ml/discussions/130), we use `black`, `flake8` and `mypy` to enforce certain format criteria. Currently we are ignoring some of...

Auto-Detect when changing params in `dataset_balanced_division_to_folds(reset_split=False)`

1

**Is your feature request related to a problem? Please describe.** When calling `dataset_balanced_division_to_folds(reset_split=False)` we don't look at the parameters: ``` if os.path.exists(output_split_filename) and not reset_split: return load_pickle(output_split_filename) else: ... ```...

**Describe the bug**\ The unit-test `fuse.dl.tests.test_cat.TestCrossAttentionTransformerEncoder test_all_contexts` randomly fails: ``` ====================================================================== ERROR [2.241s]: test_all_contexts (fuse.dl.tests.test_cat.TestCrossAttentionTransformerEncoder) test cross attention transformer for each of the three context options: "seq_a", "seq_b" and "both"...

**Is your feature request related to a problem? Please describe.** Currently the CI output only shown once done running (see `Jenkinsfile` file). **Describe the solution you'd like** Displaying the output...