SYSU-SinLee

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How to implement heterozygote sites in IQ-TREE?

> Thje documentation for v1.6 says it does handle IUPAC codes correcrtly. > So I assume 2.x is the same. Thanks for your reply. I think there are some differences...

How to deal with the "Disentangling failed" and "Assembly based on scaffolding may not be as accurate as the ones directly exported from the assembly graph" warnings.

> `to use all reads, set '--reduce-reads-for-coverage inf --max-reads inf'` Sorry for replying late because it cost a long time for the software to finish. I followed your suggestion and...