measurePSF

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This would help develop a visual understanding the of the PSF also helps to sort out the scale issue of the ZY and ZX plots. In association with this: are...

raacampbell

- `y` axis is "pix intensity" - `x` axis is just "pixel number"

raacampbell

Take image of a uniform slide in ScanImage then run function to analyse it. The function should do the following: - `jet(10)` the image with colour changes every 10%. Add...

raacampbell

recordPSF fails if PC username contains a hyphen

1

'recordPSF.m' regexp function in `line 57` doesn’t work (produces the wrong file name) when the PC username contains a hyphen. Can we please replace with `strtrim` (same as in `logpath.m`)

raacampbell

Option to set main SI window to have look-up table be jet(10)

1

Fred says: "We noted before to take a chroma slide image and display it with colormap(jet(10)). this would be more informative if we displayed the gray scale value ‘contour lines’,...

raacampbell

The fit of the PSF along the axial dimension does not take into account potential tilt of the PSF. Thus, for tilted PSFs, the value of the Z FWHM will...

raacampbell

Ensure pixels in XY and YZ projections are square

1

We get spherical-looking PSFs when zooming in. That's annoying fix it.

raacampbell

Consider also how to make this URL customisable depending on the source repo. This sounds hard to do, though...

raacampbell

measurePSF would be nice if it could also take stack into fluorcal slide

1

i.e. feed it an image from a really thin fluoro layer. Currently crashes because the xy fit fails since there is no bead

raacampbell

Maybe use percentiles for scaling. It can be hard to see the grid.

raacampbell