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                                            Yu Dongyue

Error in enrichKEGG() function

I have the same troble, are you resolve that? Is there some thing wrong with our Internet issue？

Pay attention: [https://rest.kegg.jp/list/all] this api dose not work now!

The API was changed, new: https://www.kegg.jp/kegg/rest/keggapi.html that is right: r$> clusterProfiler:::kegg_list function (db, species = NULL) { if (db == "pathway") { url