Simon Pearce
Simon Pearce
Superceded by #5897
Scratch that, I've just tested and hit the following error on a different sample: `CDX18_I_REP3.mLb.clN.bedGraph is not case-sensitive sorted at line 23978872. Please use "sort -k1,1 -k2,2n" with LC_COLLATE=C, or...
Have you tried increasing the memory for this process with an additional config file? Not just increasing the max memory overall.
Add an additional config file and pass it to nextflow with -c ``` process { withName: "BEDTOOLS_GENOMECOV" { memory = 240.Gb time = 24.h } } ``` (you may run...
> Closing the issue but please re-open if you'd like to discuss further! Ah, completely forgot about this one, been busy with other bits ATM.
Does this help fix #6696 ?
Can we set pipefail globally? Is it already done?
These look like very seperate use-cases and I would say it would make sense to make individual submodules for each one.
> > You have ~40 input channels, I just don't see how that is going to be usable or maintainable > > I agree, it is difficult. But then we...
> I've fixed the issues with prettier and formatting. But I'm not sure what is happening with pytests failing. The docker version I run locally finishes successfully. Conda often gives...