Shuaibing
Shuaibing
Hi there, **Q1. Ambiguous vesion difference** Threr are two pathes where I can download MutSig2CV, p1. link in readme: `http://software.broadinstitute.org/cancer/cga/sites/default/files/data/tools/mutsig/MutSig2CV.tar.gz` p2. path on github: `https://github.com/getzlab/MutSig2CV/blob/master/bin/MutSig2CV` **MutSig2CV from p1 can't read...
Hi there, I read this in part **Calling methods** of [the document](https://cnvkit.readthedocs.io/en/stable/pipeline.html#calling-methods): > But the outer cutoffs of -1.1 and +0.7 assume 100% purity, ... However, My calculations using the...
Hi there, As I understand it, the `cn` column of `*call.cns` represents **each segment’s absolute integer copy number**, however, some negative number exists in cn column.  Can you help...