Roxane Boyer

Had the same issues : ` streptidy git:(master) ✗ prokka -h Can't locate Bio/Root/Version.pm in @INC (you may need to install the Bio::Root::Version module) (@INC contains:` And I directly tried...

Hello there, I had the exact same issue. Minimap2 worked fine but miniasm does not produce any output for some particular fastq file without any further indications. Did you solved...

Hello there, I have the same issue, and even worse he doesnt even seems to read any hits before : I have a 63G arabidobsis-overlap.paf.gz file and a 20G fastq...

I tried something shorter with tophat2 : tophat2 --num-threads 30 --no-discordant --max-intron-length 50000 -o /media/loutre/SUZUKII/annotation/tophat_out/pro /media/loutre/SUZUKII/annotation/indexes/cleaned_canu3_suzukii '/media/loutre/SUZUKII/annotation/evidences/suz_pro.R1.fastq.gz' '/media/loutre/SUZUKII/annotation/evidences/suz_pro.R2.fastq.gz' I added the --no-discrodant option because I thought it could improve Cufflinks...

Figured out this can be done by just adding a new line in the stats module like so : ```python def alignment_chart(data): """Make the HighCharts HTML to plot the alignment...

Hi @vladsavelyev ! Happy you are picking this up ! I wasn't too sure my solution was elegant, so I never pushed it on github. But this is how I...

Don't mind the wording I chose there (usefull reads etc), I did it for a custom request, but this is just an example on how I extracted and then displayed...

Sorry I don't have anymore at this moment :(