RvV1979

I think the idea is that you just copy the Snakefile to the directory of your choice and run from there. HTH

Thanks for the prompt reply and advice. I am doing assemblies of closely related plants (same species) but orientation is not always conserved for *1 and *2. I can see...

Hi Kathrin & Tony, I second this request. It would be really great to be able to plot subsequences keeping the original sequence coordinates. Is there any progress on this...

Thanks for your reply. I was specifically looking for a non-manual solution. In the end, I implemented a fix based on the `fix_colours()` function from [in https://github.com/TCLamnidis/AdmixturePlotter](https://github.com/TCLamnidis/AdmixturePlotter/blob/master/AdmixturePlotter.R) but then applying...