Jakob Russel

Output with too long spacers

2

Hey, By default the spacers should not be longer than 50bp, but in some cases arrays are identified even though some spacers are much longer than 50bp. See example below:...

Different substrate annotations in dbCAN-PUL and run_dbcan4

2

Hi developers, There seems to be different substrate annotations in dbCAN-PUL and those in the output from run_dbcan. Not sure if it's intended or an error. For example, PUL0291 has...

**Please provide the following:** * Name/description of method * Link to publication if it exists * Is the method already implemented in R? * Link to code repository if relevant...

.. xgboost will fail with a "Incompatible model" error. This should be handled more gracefully

At the moment, low-quality single-effector HMM matches near a CRISPR is only visible in the plot, but are not included in the CRISPR_Cas_putatitive.tab output file. This should be fixed.

Include HMMs for fusion proteins, such as Cas1-RT, Cas4-Cas1, and Cas6-RT-Cas1

Hybrid loci in which one of the subtypes is a Class 2 are sometimes missed. Hybrid classification should be optimized to fix these cases.