Jakob Russel comments

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                                            Jakob Russel

ps_venn ran fine the first time and then get an error; ps_euler runs fine.

Hi I have not seen that error before, and have no idea how it can arise. I would need a example dataset to test if I can reproduce the error....

ps_venn ran fine the first time and then get an error; ps_euler runs fine.

Closing due to no answer

ps_venn ran fine the first time and then get an error; ps_euler runs fine.

Hmm, could it be a version problem. The following ran fine with MicEco 0.9.18 and eulerr 6.1.1: ``` library(phyloseq) library(MicEco) data(GlobalPatterns) # Reduce the number of groups ss

Less abundant Asvs

Not directly no. But you can copy the function and create your own version. All you need to do is to reverse the less than ()

Generation of core.xx file

Looks like hmmsearch is crashing, but still producing output that cctyper thinks is complete. Hard to say what is going on. Maybe your fasta headers contain special characters or is...

Source for repeats.fa

Hi Jonas No. it is not possible to link a repeat from repeats.fa to an assembly. The curated repeatTyper model was build from Makarova et al. (2020) and Pinilla-Redondo et...

Cas12l subtypes are detected from web server but not from standalone version

You see this difference because you compare two different versions of CCtyper. I can see your standalone version is quite old (1.2.1) and the webserver version is 1.8.0. Cas12L was...

Impossible to obtain results with CrisprCasTyper

Hi I need some more information to able to help. Are you using the webserver or a local installation. If you use a local installation, what version have you installed?...

Impossible to obtain results with CrisprCasTyper

Do you have a job ID?

Impossible to obtain results with CrisprCasTyper

I can see that job has finished, but hasn't found any CRISPR-cas operons: https://crisprcastyper.crispr.dk/#/jobs/94k3k3kf8x