Russell Bainer

Results 6 comments of Russell Bainer

I'm also catching this bug- any ideas about workarounds? ``` > ds_10_columns sessionInfo() R version 4.0.3 (2020-10-10) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.4 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/atlas/libblas.so.3.10.3...

Following up, I tried the rhdf5 workaround suggested by @rajivnarayan and I continue to get the segfault, but I notice that I am getting a slightly older version from Bioconductor...

Hi Ted, Here's the error I get from an `devtools::install_github()` call: ``` [Many lines of compiler output] ** R ** inst ** byte-compile and prepare package for lazy loading **...

No, I'm sorry if my previous note was ambiguous- the github error is derived from the `rhdf5` library install, not cmapR. I'll update when I have had time to try...

Can confirm that the install and run works as promised in the specified docker container; this is a fine workaround IMHO. Not sure how interested you are in tracking down...

As an update, I was able to make this work if I just specified a column in `design`, which is thankfully an available option here. Still curious about the error...