Liushaorui

mine solved... I missed addGCBias() step, getBackgroundPeaks() & computeDeviations() wouldn't work without it. hope this helps.

Facing the same issue，the 'monocle3-conversion-bugfix' fix it then after re-installation and re-start R

same issue, have to set min_expr=1e-5, if this is a right level for gene expression

in the function plot_genes_in_pseudotime() https://rdrr.io/github/cole-trapnell-lab/monocle3/src/R/plotting.R, seems like each cell divide by its size-factor but then forget to multiply by some coef like 1e4: `cds_exprs

I still have issues in 'expectation' values from `fit_models` and `model_predictions` so that I couldn't figure out how to get a confident trend line for a specified gene along the...

@xizhihui that's cool ! here the key issue becomes how to build boost in win10 with 'cl' ~

hi, got confused too, then checked the code, seems ggpubr::stat_compare_means and ggsignif::ggsignif both have little description about it, considering neither of them has full definitions for all available tests it...

same issue right now, half hour to run findallmarkers for a similar datasize, but 3 hours have past, no any other info except "Recorrecting SCT counts using minimum median counts:...

> Hi, > Thanks for your software. I want to use CONICSmat to classify tumor and nontumor cells in a 10X dataset. AND I come across two probelms. > 1....

hi I just got a similar issue using clust v1.12.0, I got a cluster like this :  then I wanted to extract genes in C3 to do further analysis,...