Rob

I get the same error when I enable trimming. Everything runs fine when it is not enabled. At the moment on line 98, it reads: ` "results/trimmed/{sample}_{unit}_{group}.fastq.gz",` which I changed...

Hi @aryarm , Perfect, I'll see if I can give that a go, and let you know if I run into any issues. I'd already started writing the scripts for...

Thanks for all the suggestions! I am not a hard-core python programmer, but I was able to hack together something to get GPX files with just heart-rate in the cases...

Thanks again for all the help! I had another question (happy to open another issue if that would make sense for search-ability). My question is: do you know of some...

I created a new conda environment with the recommended snakemake version, and now the error is no longer there. It seems that Snakemake 6.6.0 is not backwards compatible with Snakemake...

Hi @aryarm , I was able to run part of the pipeline on our cluster. However, it looks like Snakemake 5.18.0 does not play well with the slurm cluster profiles...