Jose Rodrigues, D.O., Ph.D.

icon company Columbia University Irving Medical Center icon location Pediatrics Resident Pediatrician-scientist training and development program (PSTDP) Columbia University Irving Medical Center

Results 3 comments of Jose Rodrigues, D.O., Ph.D.

Error when running mafft in roary

Hi - I am also running into this error. ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: Could not read file 'pan_genome_sequences/group_2010.fa.aln': No such file or directory STACK: Error::throw This only occurs when...

Error when running mafft in roary

Thanks for the reply. I tired a lot of different things, including updating my perl modules, as well as reinstall roary. What ended up working for me was moving all...

Cannot get roary to run

I've been looking for solutions for a similar issue. Have you tired this https://github.com/sanger-pathogens/Roary/issues/403 Might be a directory problem.