Robin-Rounthwaite

Global MSA with free end-gaps for a subset of sequences

9

## Platform - SeqAn version: 2.4.0 (plan to update to seqan3 soon) - Operating system: Linux robin-Surface-Book 5.12.2-surface #1 SMP Tue May 11 18:20:34 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux...

**1. What were you trying to do?** I was trying to map the following read in vg giraffe (which I have saved in sim.crash.gam, mentioned in section 5 below): ```...

Library and Public Headers

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Hello! Would you be able to add a library and public headers to kalign, so that I can use your aligner from within my cpp project? I'm developing a tool...

VG convert to gfa and back will drop path data.

7

**1. What were you trying to do?** Convert an xg graph to gfa, make a small edit, and then convert to pg. **2. What did you want to happen?** I...

names attribute must be the same length as the vector

1

I get quite far into the pipeline before crashing now. But I still crash during the running of an sveval step. (on /private/groups/patenlab/rrounthw/sveval/snakemake in mustard) ``` I have no name!@9bf86e5c67f5:/app$...