Roberto

Hi Marius, I run into exactly the same two errors, I compiled the mex files succesfully and kilosort 2.0 is not on the path. ``` This is the output of...

Reading other related issues I think the problem comes from the way ecephys_spike_sorting concatenates trials. Trials are concatenated with zeropadding, so if you concatenate two recordings that had a 5...

Hi! You should take a look at issue #275. I have a fork of kilosort that took care of that problem. You can also reduce the "pause" with cat_gt https://billkarsh.github.io/SpikeGLX/help/dmx_vs_gbl/dmx_vs_gbl/...

Just managed to add the plugin, it´s great, thanks a lot @mswallac. To make it work I add to to comment out matplotlib.use('TkAgg').

Hi, Had the same problem in the past days, I just realised that a dataset will raise Assertion error when kilosort runs with minFR = 0 but not if minFR...

how can I parallelize a code that requires a cache (cache= VisualBehaviorNeuropixelsProjectCache.from_s3_cache(cache_dir=neuropixel_dataset_behavior))? Is this possible? Joblib encounters a Pickling error dealing with the cache object: ``` --------------------------------------------------------------------------- _RemoteTraceback Traceback (most...

Great👍

Looking around I found s1 defined in the SVCA function: https://github.com/MouseLand/stringer-pachitariu-et-al-2018a/blob/8dce0d516bb8a4b16e245b897403d76cd1d25ae7/multiDactivity/SVCA.m#L24-L33 If I add this definition of s1 to peerPC_cov.m the code seems to run fine but is everything correct?

This field is missing as well https://github.com/MouseLand/stringer-pachitariu-et-al-2018a/blob/8dce0d516bb8a4b16e245b897403d76cd1d25ae7/stimspont/sharedVariance.m#L101

After removing "_stim" everything seems to run fine.