Rémi Allio

Hey Marcela, Thank you for the update! I have just two little points: 1- Please, could you replace "mitoFinder" by "MitoFinder" 2- It might be useful to include citation information...

Hi, MitoFinder is written in python2.7. Does using the following command solve the problem? `python2.7 /home/metzgerm/mybiotools/MitoFinder/mitofinder -h`

The easiest fix might need you to replace the first line of MitoFinder executable and each .py file of the repository to ask the program to specifically use python2.7. The...

Hi Pedro, I am using MitoFinder on my side for a current project and I get the [SeqID]_final_genes_NT.fasta file as expected. I don't know what's going on on your side....

Hello Aurélien, There are two possibilities here. Either CANU discarded the mitochondrial sequences due to their suspicious coverage (i.e. really high compared to genomic sequences), or some chimeric sequences have...

Hi Andrea, I am very sorry to hear that you have more trouble using the v1.4 than the v1.2... This error is surprising, I honestly don't know what is happening...

Thank you for the file. Using the [singularity image of the version 1.4.1](https://cloud.sylabs.io/library/remiallio/default/mitofinder) I could not reproduce the error. I only find the HEG gene not recognized by MitoFinder. Did...

Hi, Since you are working on Mac, could you please confirm that you have followed all the installation steps described [here](https://github.com/RemiAllio/MitoFinder#get-mitofinder-and-install-dependencies-mac-os)? Then, could you please share the geneChecker_error.log and geneChecker.log...

Hi Andrea, We usually get this error when one of the files necessary for the execution of the subprocess is missing or cannot be opened by the program (restricted permission)....

I am very sorry for the inconvenience.. To be sure it's not an installation or permission problem, could you please try to use the [singularity image of MitoFinder v1.4.1](https://cloud.sylabs.io/library/remiallio/default/mitofinder)? Let...