Rémi Allio

Hi @bgruening, Thank you for your message. I will defend my PhD thesis in a few days so it will be difficult for me to do a lot within the...

Hi, Sorry for the long delay ... I haven't worked on a conda package yet but, since our last conversation, I have created both the singularity image (```singularity pull --arch...

Hi! Indeed, the mitogenome is close to being complete if not yet complete. There are two things: either megahit failed in assembling a part of the genome (most likely the...

Hi, Did you try to run MitoFinder using its [singularity container](https://github.com/RemiAllio/MitoFinder#run-mitofinder-with-singularity)? Otherwise, it seems that the -6 -9 errors can be associated with memory issues. How much RAM do you...

Hello, Yes, this should be more than enough... If it doesn't work, it means that the problem comes from your system configuration and you will have to discuss it with...

Hi, Well, honestly, I have no idea about what is happening with metaspades in your case. It's even stranger that no errors seem to occur... MitoFinder uses Spades 3.13, but...

Hi, Thank you for your message. Indeed, when I developed MitoFinder I thought about he fact that it could be also used for Wolbachia genomes. That's why I added the...

Nice 👍 I look forward to hearing from you! Cheers, Rémi

Thank you @Andy-B-123 for such a positive feedback! Glad you liked it 😃

Hi Marcela, The license is included in each script file. For example, in the file "mitofinder", you can find the following license: ''' Copyright (c) 2019 Remi Allio - ISEM/CNRS...