Remi Gau

Happy to provide a draft. I have been meaning to write something similar to use pre commit to lint Matlab code. Could do something for python here instead as I...

I have not had a close look but I think that most of your doc must be auto generated through some sphinx / rst directives. Not sure where the discrepancy...

FYI: this not urgent for our book, but felt like this was worth mentioning in case someone else runs into the issue

SPM users tend to automatically unzip images before anything else because SPM "batches" are finicky with .nii.gz. For context and future reference. Tried with 'SPM12 (7487)' Reading '.nii.gz' works fine...

Wondering if supporting the `bids_filter_file.json` like fmriprep does would be possible for this ?

> LGTM. I think the PR title should be updated, though, given the limited scope of your changes. Good point. Just changed it.

> 2\. Do tool developers/maintainers agree that the algorithm proposed would be readily implemented in their packages? I know that the BIDS validator and PyBIDS implement the inheritance principle; I...

> While the alternative is unambiguously clear regarding the order of metadata file loading, the current principle rules have necessitated moving data exclusively applicable to `func/` data out of the...

Random thought that crossed my mind. Could this "mutiple inheritance" be made 'easier' and more explicit by using an "intendedFor" field in some of your derivatives JSON files? Still need...

Related to #1193