Rolando Perez

icon indicating an email [email protected]

icon company RP Bioconsulting icon location Santa Clara, CA icon location I use biotic and abiotic computers to build things and solve puzzles.

Results 4 comments of Rolando Perez

Error parsing iprscan.xml during funannotate annotate, after local iprscan run

Thanks so much for your prompt reply. I opted to try: funannotate annotate -m docker, it is still running. version: InterProScan-5.53-87.0 iprscan.xml has one line, even though the below command...

Error parsing iprscan.xml during funannotate annotate, after local iprscan run

command using local Interproscan: ~/funannotate-docker iprscan -i fun/ -m local -c 6 --iprscan_path ~/my_interproscan/interproscan-5.53-87.0/interproscan.sh output after ~6 hours using 8 core 32 GB, Debian 4.19.208-1 x86_64: Running InterProScan5 on 17478...

Error parsing iprscan.xml during funannotate annotate, after local iprscan run

understood, thank you.

Error in Diamond step

So far it seems my issue was the memory for the docker VM was set at 2 GB. Thank you!