Raphael Meudec

NiftiMapsMasker takes a large amount of time to perform .transform when using DiFuMo 1024 atlas

6

Nilearn version: 0.8.1 ### Expected behavior Computation is quite long for DiFuMo 1024 on a simple image. I guess there might be some optimizations that could be done to quicken...

Boosting Neurovault downloader's performance

2

This issue is more of a report on investigations I did to improve the performance of the `fetch_neurovault` method. Here are some sample downloading time: - 1.5 minute for 4...

Before opening your PR, make sure you've checked the following points: - [x] Added code is tested - [x] I've run Black and linter

For v1.0.0, we should separate the computation of the attribution maps (i.e generate something with shape `(N, H, W, 1)`) from the visualization which is usually a grid.

Subclassing API

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The current version of tf-explain does not support subclassing API because of the way subgraphs are created. See: https://stackoverflow.com/questions/52826134/keras-model-subclassing-examples

This PR makes it possible for the user to pass `y_true` instead of just giving a `class_index`. It's helpful as users won't need to build their dataset with one class...

API Documentation not showing up on ReadTheDocs

1

When building the docs locally, API documentation is available. However, it doesn't appear when deployed on ReadTheDocs