Ram Srinivasan

icon indicating a website link http://www.linkedin.com/in/ramakrishnanrs

icon company Baylor College of Medicine icon location Houston, TX icon location I'm a programmer-turned-bioinformatician exploring the field of translational genetics. I love UNIX, problem solving and puzzles.

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Is this done? How do we verify if this will happen again?

Segmentation fault (core dumped)

This happened to me just now - looks like it happens when the input file is empty.

Is it reasonable to use DiffusionMap with n_pcs = NA?

Also asked on bioinformatics SE: https://bioinformatics.stackexchange.com/questions/21937/using-diffusion-map-on-normalized-or-pca-reduced-data

xenome ouput fastq.gz format

@Himalayan-Java That is not a viable solution, you cannot pipe the output from the tool as it does not write to a pipe-able stream. Like you say though, a script...

Xenome classify output file

Which version are you using? I see this bug in xenome version 1.0.1 downloaded from https://github.com/data61/gossamer/issues/9#issuecomment-402958742 I use `sed '1~4s/^/@/' each_output.fastq` to get around it.