RUAN Yuyan

Unable to read in all image layers in .vdi file, only index 0 is read in

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**HESlide and Slidedata only read in the top one image in .vdi file** I use the `BioformatsReader` in `cellprofiler_core.readers.bioformats_reader` to read the ets file, which contains three images as shown...

Resize plot to any ratio and size

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### Is your proposal related to a problem? The plot ratio is fixed once it is created. Whenever zoomed in or out, or slide the splitting bar, the ratio is...

Hi thanks a lot for the codes! May I know which publication this repository is based on? In addition, the data at https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=52758026 is quite large (1.2TB+2.0GB). But the data.zip...

**BioformatsReader only read in the top one image in .ets file** I use the `BioformatsReader` in `cellprofiler_core.readers.bioformats_reader` to read the ets file, which contains three images as shown in QuPath....

Hi there, thanks a lot for the great work and congratulations! I want to quickly adapt your method in my dataset, and sorry that I didn't have time to go...

module "datasets" not found

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Hi, thanks a lot for the great work! It seems that the data module is missing, and there is module import related to this. https://github.com/bowang-lab/scGPT/blob/bc8939504fc62dd617360618a840ca9b67419b5a/scgpt/scbank/databank.py#L10 I cannot find a file...

Where shall I find the codes for Supplementary Figure 1

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Hi, is there any update on implementing the Generative attention masking? Could you please also provide some explanation in https://github.com/bowang-lab/scGPT/blob/dev-temp/examples/pretrain.py regarding how the mechanism in Fig. S1 is implemented? Thanks...

Apply Pixie to Codex dataset

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Hi, thanks a lot for the great work and congratulations!! I wish to apply this wonderful method on my codex dataset to reduce manual work! However, I found that some...