Ryley Dorney

I'm trying to generate multiple transcriptomic datasets in parallel with different parameters (error model, coverage/depth, and sequence identity), however, Badread consumes a lot of memory while doing this and occasionally...

Pipeline fails at multiple stages on simulated nanopore dataset: mismatch between length of bases and qualities for reads

8

Hello, I am currently testing JAFFAL and other long-read fusion finding tools on a simulated dataset ~generated using badread to simulate reads and FUSIM to simulate fusions (including tri-fusions). The...

How to handle PacBio simulated reads before mapping

2

Hello @rrwick, I experienced some poor mapping performance with Minimap2 for reads simulated using the pacbio2016 (only changing depth, mean sequence identity, all other settings as default). I noticed it...