QuinceyLv

Image alignment in getGSEAplot

1

Hi, I was using getGSEAplot with my data and encountered a warning: "Graphs cannot be vertically aligned unless the axis parameter is set. Placing graphs unaligned." and the output was...

Installation stuck at step "testing if installed package can be loaded from temporary location"

2

Hi, I tried to install RBioFormats on R4.3.0: `BiocManager::install("aoles/RBioFormats")` ── R CMD build ───────────────────────────────────────────────────────────────── * checking for file ‘/tmp/9771460.1.SC1.q/RtmptHlfNa/remotes5b886ec82ce9/aoles-RBioFormats-5ec5fad/DESCRIPTION’ ... OK * preparing ‘RBioFormats’: * checking DESCRIPTION meta-information ... OK...

Error in detect_tissue: setting an array element with a sequence

2

Hi, Thanks for the great package. I was running spacemake with visium data, and got an exception: rule run_automated_analysis: input: projects/visium_demo/processed_data/DSG_Control/illumina/complete_data/dge/dge.exon.polyA_adapter_trimmed.mm_included.spatial_beads_visium.h5ad output: projects/visium_demo/processed_data/DSG_Control/illumina/complete_data/automated_analysis/visium/umi_cutoff_1000/DSG_Control_visium_results.h5ad jobid: 47 wildcards: project_id=visium_demo, sample_id=DSG_Control, data_root_type=complete_data, downsampling_percentage=,...