QuanlongJiang

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Manta cannot detect same chromosome large deletions

I also got this problem. Large deletion or inversion in the same chromosome can't be detected. Have you solved this?

Manta cannot detect same chromosome large deletions

I‘ve switched to lumpy. Gridss2 is also OK. The sensitivity is not good of Manta. I'm not sure it's easy to solve.

Manta cannot detect same chromosome large deletions

> I found my solution,I have set target bed file,when drop this parameter,we got the large deletions and translocations > […](#) > ---- Replied Message ---- | From | ***@***.***>...