QiaolanOSU
QiaolanOSU
2020/01/22/02:55:53 PM MTAG: Multi-trait Analysis of GWAS Version: 1.0.8 (C) 2017 Omeed Maghzian, Raymond Walters, and Patrick Turley Harvard University Department of Economics / Broad Institute of MIT and Harvard...
> Can you post the log file from your analysis? It may help diagnose what's going on. Also, have you verified that all the p-values are numeric? > […](#) It...
> It looks like the program is failing during the LDSC step. Does LD Score Regression run on your data if you run it directly? > […](#) I don't know....
> It looks like the program is failing during the LDSC step. Does LD Score Regression run on your data if you run it directly? > […](#) I searched for...
> It looks like the program is failing during the LDSC step. Does LD Score Regression run on your data if you run it directly? > […](#) Excuse me, one...
> This makes me suspect again that there may be inf or NaN values in your p-value column. Even if the column is typed as numeric, some of the values...
> This makes me suspect again that there may be inf or NaN values in your p-value column. Even if the column is typed as numeric, some of the values...
> What happens if you drop the SNPs with p-values exactly equal to 0? > […](#) Problem solved. Z values have some inf/-inf, but somehow R did not recognize them...
After I filtered the genotye by plink (--geno 0), the error disappeared but I got "'h2' should have only positive values". I have two questions: 1. Can an individual have...
> Which software are you using? Which part of the tutorial? Sam > On Thu, 1 Oct 2020 at 7:19 AM, QiaolanOSU ***@***.***> wrote: After I filtered the genotye by...