QUEST2179

value error

1

Dear developer, I tried a real dataset GBM from original paper but got the following error. Could you please help? Thanks! mirna = pd.read_csv('GLIO_Mirna_Expression.txt', index_col=0, sep='\t') exp = pd.read_csv('GLIO_Gene_Expression.txt', index_col=0,...

load csv file

10

Dear Developer, try to mimic beta_lactamase.py to load csv file directly, but got the following error. could you please help? Thanks! File "C:\Users\18482\work\torchdrug-master\torchdrug\tasks\property_prediction.py", line 66, in preprocess if not math.isnan(sample[task]):...

mat1 and mat2 must have the same dtype

1

Follow Aligning proteins wiki Traceback (most recent call last): File "C:\Users\work\project\structure\deepblast-master\testDeepBlast.py", line 19, in pred_alignment = model.align(x, y) File "C:\Users\work\project\structure\deepblast-master\deepblast\trainer.py", line 84, in align decoded, _ = next(gen) File "C:\Users\work\project\structure\deepblast-master\deepblast\alignment.py",...

AssertionError

2

python zeroshot_predict.py --gnn_model_name k20_h512 --mutant_dataset_dir data/mutant_example/no_exp --result_dir result/no_exp --------------- ProtSSN k20_h512 --------------- Processing... Processing A0A5J4FAY1_MICAE: 100%|████████████████████████████████████████████████████████| 1/1 [00:02> Protein names: ['A0A5J4FAY1_MICAE'] >>> Number of proteins: 1 >>> k20_h512 Number of...