Yun YAN

I came across this exact same problem in Mac. I solved it by reinstalling the GNU Fortran myself: See how R officially said using `gfortran` in Mac:

``` query.exp

@netphantom Could you change the issue title to sth like *GDCquery did not return "Blood Derived Normal" RNA-seq data that are available at TCGA* so that the author instantly knows...

Quote from R (https://cloud.r-project.org/): >Important note: R 3.4.0 El Capitan binaries are using Clang 4.0.0 and GNU Fortran 6.1 to provide OpenMP parallelization support and C++17 standard features. If you...

>I am wondering is there a way to visualize the vector fields on a single TSNE plot of aggregate cells of all eight samples? Yes, it has. Merge the eight...

I don't think it is good to use logCounts for the input. Because velocity.R internally relies on raw counts. Here are some examples: - cell size calculation https://github.com/velocyto-team/velocyto.R/blob/d7790346cb99f49ab9c2b23ba70dcf9d2c9fc350/R/momentum_routines.R#L109-L113 - Use...

I happened to be a fan of both packages. You would find the answers at the Seurat2's [pbmc3K tutorial](http://satijalab.org/seurat/pbmc3k_tutorial.html). For **cell clustering**, see the section "Cluster the cells". The function...

``` OSError: Unable to create link (name already exists) ``` Probably delete the existing 'ab.h5' file which saved the partial results. Then re-run to export.

Yes. It can now. See the new PR #14 . See these two runs. Technically speaking, the colors are not exactly the same, but visually speaking, they look the same....

I found popscle's docker container makes life smooth. https://github.com/statgen/popscle