interARTIC
interARTIC copied to clipboard
Psy-Fer
InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
Hi @Psy-Fer, I was trying an analysis for one of SARS COV2 data wherein the job failed to complete and it is stuck in "progress" state. The last few lines...
list the protein variant, like `S123G` in the output report. Can probably list int the variant table in another column Request from noncodo (Martin)
@Krysasp can I get some more clarity on how you solved this issue? i'm get the same " UnboundLocalError: local variable 'bed_file' referenced before assignment " error at the moment...
I'm trying to start a run. filling the details in the webpage returns me to the top with an error about the output being the same directory as data (i'll...
Just a suggestion, but would be nice to be able to still generate consensus with regions
Finding strange output at the first step of the pipeline, im assuming it is trying to use guppyplex to collect demux data. output looks like ***RUNNING GUPPYPLEX COMMAND*** Illegal instruction...
Add an option to autodetect barcodes and process all of them with default sample names, rather than requiring a csv file assigning sample to barcode. This isn't ideal for clinical...
If you are doing analysis on a run with 96 samples, medaka should work fine, but nanopolish might throw an error about too many arguments in the celery.log file. A...
Progress bar is broken and doesn't line up with various new pipelines. Fix it up so it doesn't confuse users.
When analysing a pre-demultiplexed run where the fastq files are gzipped, ( *.fastq.gz ) the output will say something like RB01.fastq not found ..... .gz fastq files not being detected...