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Nanopolish and 96 barcodes

Open Psy-Fer opened this issue 3 years ago • 0 comments

If you are doing analysis on a run with 96 samples, medaka should work fine, but nanopolish might throw an error about too many arguments in the celery.log file.

A quick fix for this is to split the sample csv file into 2, with 45 samples in each. Then submit the job twice with a unique job name and output folder for each, and the corresponding half sample .csv file.

A fix will be made to get around this limitation soon.

Psy-Fer avatar Sep 18 '21 18:09 Psy-Fer