tutorials

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As described in: https://github.com/Project-MONAI/MONAI/issues/5200 Our team will prepare our solution as a tutorial here.

yiheng-wang-nv

Auto3DSeg tutorial padding error caused by the swinunetr template

3

**Describe the bug** The swinunetr template in Auto3DSeg would fail when it's running on the MSD Task05_Prostate datasets. Specifically, the SpatialPadd gave an error as below ``` [2022-09-24T19:15:57.111Z] CalledProcessError: Command...

mingxin-zheng

Signed-off-by: Wenqi Li Fixes # . ### Description A few sentences describing the changes proposed in this pull request. ### Checks - [ ] Notebook runs automatically `./runner [-p ]`

wyli

BTCV performance

1

Hi Ali. In the tutorial of BTCV multi-organ [segmentation,](https://github.com/Project-MONAI/tutorials/blob/main/3d_segmentation/unetr_btcv_segmentation_3d.ipynb) the val dice score is about 80%. How can I get it to 88%, like in the unetr paper. Just more...

jamesben6688

creating a demo about debugging with monai bundle configparser

1

**Is your feature request related to a problem? Please describe.** make a demo about how to debug monai bundle configs follow up of https://github.com/Project-MONAI/MONAI/pull/5104, two ways to enter the debug...

wyli

**Describe the bug** ``` 02:28:58 Running ./3d_segmentation/unet_segmentation_3d_ignite.ipynb 02:28:58 Checking PEP8 compliance... 02:28:59 Running notebook... 02:28:59 Before: 02:28:59 "max_epochs = 10\n", 02:28:59 After: 02:28:59 "max_epochs = 1\n", 02:29:03 MONAI version: 1.0.0rc1+9.ge98226dd...

wyli

Using synthetic data in the deepatlas tutorial notebook?

2

Hello, Thank you for the nice tutorial! I am trying to run the deepatlas tutorial with synthetic data. However, since monai.data.synthetic.create_test_image_3d generates objects with random position, The registration of each...

magicknight

using collection names with spaces in them breaks tcia_dataset.ipynb

3

**Describe the bug** In the "Create TciaDataset" step of the notebook if you enter a collection with spaces (e.g. "Lung Phantom") into the collection variable it produces an error. Here...

kirbyju

Update "acceleration/TensorRT_inference_acceleration.ipynb"

3

Fixes #1667 ### Checks - [ ] Avoid including large-size files in the PR. - [ ] Clean up long text outputs from code cells in the notebook. - [...

KumoLiu

``` 2024-03-16 04:11:18,952 - INFO - Setting logging properties based on config: ./endoscopic_tool_segmentation/configs/logging.conf. monai.bundle.workflows ConfigWorkflow.__init__:workflow: Argument `workflow` has been deprecated since version 1.2. It will be removed in version 1.5....

KumoLiu